Welcome to BioCircos.js’s documentation!

Contents:

• 1. Introduction
  • 1.1 About
  • 1.2 BioCircos.js & Circos
  • 1.3 Funding
• 2. Demos
• 3. Getting started
  • Overview of “Getting started”
  • Step0. View demos in locale
  • Step1. Including BioCircos.js
  • Step2. <div> tag to set picture position in html
  • Step3. Genome configuration
  • Step4. Initialisation and Main configuration
  • Step5. Add Data configuration
• 4. Function Modules and Data Preparation Tools
  • 4.1 Biocircos_PrepareData.py
  • 4.2 SNP module
  • 4.3 SCATTER module
  • 4.4 LINK module
  • 4.5 CNV module
  • 4.6 ARC module
  • 4.7 HEATMAP module
  • 4.8 HISTOGRAM module
  • 4.9 LINE module
  • 4.10 BACKGROUND module
  • 4.11 TEXT module
• 5. API: Main configuration
  • 5.1 Customize SVG
  • 5.2 Customize genome
  • 5.3 Customize Events
  • 5.4 Customize Tooltips
• 6. API: Data configuration
  • 6.1 SNP module
  • 6.2 SCATTER module
  • 6.3 LINK module
  • 6.4 CNV module
  • 6.5 ARC module
  • 6.6 HEATMAP module
  • 6.7 HISTOGRAM module
  • 6.8 LINE module
  • 6.9 BACKGROUND module
  • 6.10 TEXT module
• 7. API: Genome configuration
  • 7.1 Genome configuration
  • 7.2 Example: Customize your genome by Main configuration
  • 7.3 Example: Human genome (hg19)
  • 7.4 Example: Add chromosome band on Human genome(hg19)

Indices and tables

• Index
• Module Index
• Search Page