1. Configure the width and color of genome.
<!DOCTYPE html> <html> <head> <meta charset="utf-8"> <title>BioCircos.js</title> </head> <body> <!-- BioCircos.js, Jquery.js and D3.js import --> <script src="./lib/jquery.js"></script> <script src="./lib/d3.js"></script> <script src="./lib/biocircos-1.1.0.js"></script> <!-- Prepare a <div> tag with "biocircos" id to set the picture position your will draw in html --> <div id="biocircos"></div> <!-- Data configuration --> <script src="./data/gallery/gallery06_SNP01.js"></script> <script src="./data/animation/SCATTER01_after.js"></script> <script src="./data/gallery/gallery06_ARC01.js"></script> <script src="./data/gallery/gallery06_ARC02.js"></script> <!-- Genome configuration --> <script> var TEXT01 = [ "TEXT01" , { x: -10, y: 0, textSize: 10, textWeight: "bold", //normal,bold,bolder,lighter,100,200,300,400,500,600,700,800,900 textColor: "red", textOpacity: 1.0, text: "EGFR" }]; var BioCircosGenome = [ ["EGFR" , 1211], ]; BioCircos01 = new BioCircos(TEXT01,ARC01,ARC02,BACKGROUND01,SCATTER01,SNP01,BioCircosGenome,{ target : "biocircos", svgWidth : 900, svgHeight : 600, innerRadius: 246, outerRadius: 250, zoom : false, ARCMouseOnDisplay: true, SNPMouseEvent : true, SNPMouseClickDisplay : true, SNPMouseClickColor : "red", SNPMouseClickCircleSize : 4, SNPMouseClickCircleOpacity : 1.0, SNPMouseClickCircleStrokeColor : "#F26223", SNPMouseClickCircleStrokeWidth : 0, SNPMouseClickTextFromData : "second", //first,second,third,fourth column SNPMouseClickTextOpacity : 1, SNPMouseClickTextColor : "red", SNPMouseClickTextSize : 8, SNPMouseClickTextPostionX : 1.0, SNPMouseClickTextPostionY : 10, SNPMouseClickTextDrag : true, SNPMouseDownDisplay : false, SNPMouseDownColor : "green", SNPMouseDownCircleSize : 4, SNPMouseDownCircleOpacity : 1.0, SNPMouseDownCircleStrokeColor : "#F26223", SNPMouseDownCircleStrokeWidth : 1, SNPMouseEnterDisplay : false, SNPMouseEnterColor : "yellow", SNPMouseEnterCircleSize : 4, SNPMouseEnterCircleOpacity : 1.0, SNPMouseEnterCircleStrokeColor : "#F26223", SNPMouseEnterCircleStrokeWidth : 0, SNPMouseLeaveDisplay : false, SNPMouseLeaveColor : "pink", SNPMouseLeaveCircleSize : 4, SNPMouseLeaveCircleOpacity : 1.0, SNPMouseLeaveCircleStrokeColor : "#F26223", SNPMouseLeaveCircleStrokeWidth : 0, SNPMouseMoveDisplay : false, SNPMouseMoveColor : "red", SNPMouseMoveCircleSize : 2, SNPMouseMoveCircleOpacity : 1.0, SNPMouseMoveCircleStrokeColor : "#F26223", SNPMouseMoveCircleStrokeWidth : 0, SNPMouseOutDisplay : false, SNPMouseOutAnimationTime : 500, SNPMouseOutColor : "none", SNPMouseOutCircleSize : 3, SNPMouseOutCircleOpacity : 1.0, SNPMouseOutCircleStrokeColor : "red", SNPMouseOutCircleStrokeWidth : 0, SNPMouseUpDisplay : false, SNPMouseUpColor : "grey", SNPMouseUpCircleSize : 4, SNPMouseUpCircleOpacity : 1.0, SNPMouseUpCircleStrokeColor : "#F26223", SNPMouseUpCircleStrokeWidth : 0, SNPMouseOverDisplay : false, SNPMouseOverColor : "red", SNPMouseOverCircleSize : 2, SNPMouseOverCircleOpacity : 1.0, SNPMouseOverCircleStrokeColor : "#F26223", SNPMouseOverCircleStrokeWidth : "none", //"none",3 SNPMouseOverTooltipsHtml01 : "Gene: ", SNPMouseOverTooltipsHtml02 : "<br>Position: ", SNPMouseOverTooltipsHtml03 : "AA<br>Value: ", SNPMouseOverTooltipsHtml04 : "<br>Des: ", SNPMouseOverTooltipsHtml05 : "", SNPMouseOverTooltipsPosition : "absolute", SNPMouseOverTooltipsBackgroundColor : "white", SNPMouseOverTooltipsBorderStyle : "solid", SNPMouseOverTooltipsBorderWidth : 0, SNPMouseOverTooltipsPadding : "3px", SNPMouseOverTooltipsBorderRadius : "3px", SNPMouseOverTooltipsOpacity : 0.8, ARCMouseEvent : true, ARCMouseDownDisplay : false, ARCMouseDownColor : "none", ARCMouseDownArcOpacity : 1.0, ARCMouseDownArcStrokeColor : "#F26223", ARCMouseDownArcStrokeWidth : 1, ARCMouseEnterDisplay : false, ARCMouseEnterColor : "none", ARCMouseEnterArcOpacity : 1.0, ARCMouseEnterArcStrokeColor : "#F26223", ARCMouseEnterArcStrokeWidth : 1, ARCMouseLeaveDisplay : false, ARCMouseLeaveColor : "none", ARCMouseLeaveArcOpacity : 1.0, ARCMouseLeaveArcStrokeColor : "#F26223", ARCMouseLeaveArcStrokeWidth : 0, ARCMouseMoveDisplay : false, ARCMouseMoveColor : "none", ARCMouseMoveArcOpacity : 1.0, ARCMouseMoveArcStrokeColor : "#F26223", ARCMouseMoveArcStrokeWidth : 0, ARCMouseOutDisplay : false, ARCMouseOutAnimationTime : 500, ARCMouseOutColor : "none", ARCMouseOutArcOpacity : 1.0, ARCMouseOutArcStrokeColor : "red", ARCMouseOutArcStrokeWidth : 0, ARCMouseUpDisplay : false, ARCMouseUpColor : "grey", ARCMouseUpArcOpacity : 1.0, ARCMouseUpArcStrokeColor : "#F26223", ARCMouseUpArcStrokeWidth : 0, ARCMouseOverDisplay : true, ARCMouseOverColor : "none", ARCMouseOverArcOpacity : 1.0, ARCMouseOverArcStrokeColor : "red", //"none","#F26223" ARCMouseOverArcStrokeWidth : "none", //"none",3 ARCMouseOverTooltipsHtml01 : "", ARCMouseOverTooltipsHtml02 : "<br>Position: ", ARCMouseOverTooltipsHtml03 : "AA - ", ARCMouseOverTooltipsHtml04 : "AA<br>Name: ", ARCMouseOverTooltipsHtml05 : "", ARCMouseOverTooltipsPosition : "absolute", ARCMouseOverTooltipsBackgroundColor : "white", ARCMouseOverTooltipsBorderStyle : "solid", ARCMouseOverTooltipsBorderWidth : 0, ARCMouseOverTooltipsPadding : "3px", ARCMouseOverTooltipsBorderRadius : "3px", ARCMouseOverTooltipsOpacity : 0.8, SCATTERMouseEvent : true, SCATTERMouseClickDisplay : true, SCATTERMouseClickColor : "none", //"none","red" SCATTERMouseClickCircleSize : "none", //"none",4 SCATTERMouseClickCircleOpacity : 1.0, SCATTERMouseClickCircleStrokeColor : "#F26223", SCATTERMouseClickCircleStrokeWidth : 0, SCATTERMouseClickTextFromData : "fourth", //first,second,third,fourth/fifth column SCATTERMouseClickTextOpacity : 1, SCATTERMouseClickTextColor : "red", SCATTERMouseClickTextSize : 8, SCATTERMouseClickTextPostionX : 10.0, SCATTERMouseClickTextPostionY : 10.0, SCATTERMouseClickTextDrag : true, SCATTERMouseDownDisplay : false, SCATTERMouseDownColor : "green", SCATTERMouseDownCircleSize : 4, SCATTERMouseDownCircleOpacity : 1.0, SCATTERMouseDownCircleStrokeColor : "#F26223", SCATTERMouseDownCircleStrokeWidth : 0, SCATTERMouseEnterDisplay : false, SCATTERMouseEnterColor : "yellow", SCATTERMouseEnterCircleSize : 4, SCATTERMouseEnterCircleOpacity : 1.0, SCATTERMouseEnterCircleStrokeColor : "#F26223", SCATTERMouseEnterCircleStrokeWidth : 0, SCATTERMouseLeaveDisplay : false, SCATTERMouseLeaveColor : "pink", SCATTERMouseLeaveCircleSize : 4, SCATTERMouseLeaveCircleOpacity : 1.0, SCATTERMouseLeaveCircleStrokeColor : "#F26223", SCATTERMouseLeaveCircleStrokeWidth : 0, SCATTERMouseMoveDisplay : false, SCATTERMouseMoveColor : "red", SCATTERMouseMoveCircleSize : 2, SCATTERMouseMoveCircleOpacity : 1.0, SCATTERMouseMoveCircleStrokeColor : "#F26223", SCATTERMouseMoveCircleStrokeWidth : 0, SCATTERMouseOutDisplay : false, SCATTERMouseOutAnimationTime : 500, SCATTERMouseOutColor : "red", SCATTERMouseOutCircleSize : 2, SCATTERMouseOutCircleOpacity : 1.0, SCATTERMouseOutCircleStrokeColor : "red", SCATTERMouseOutCircleStrokeWidth : 0, SCATTERMouseUpDisplay : false, SCATTERMouseUpColor : "grey", SCATTERMouseUpCircleSize : 4, SCATTERMouseUpCircleOpacity : 1.0, SCATTERMouseUpCircleStrokeColor : "#F26223", SCATTERMouseUpCircleStrokeWidth : 0, SCATTERMouseOverDisplay : false, SCATTERMouseOverColor : "yellow", SCATTERMouseOverCircleSize : 8, SCATTERMouseOverCircleOpacity : 1.0, SCATTERMouseOverCircleStrokeColor : "#F26223", SCATTERMouseOverCircleStrokeWidth : 3, SCATTERMouseOverTooltipsHtml01 : "item : ", SCATTERMouseOverTooltipsHtml02 : "<br>start:", SCATTERMouseOverTooltipsHtml03 : "<br>end:", SCATTERMouseOverTooltipsHtml04 : "<br>name:", SCATTERMouseOverTooltipsHtml05 : "<br>des:", SCATTERMouseOverTooltipsHtml06 : "", SCATTERMouseOverTooltipsPosition : "absolute", SCATTERMouseOverTooltipsBackgroundColor : "white", SCATTERMouseOverTooltipsBorderStyle : "solid", SCATTERMouseOverTooltipsBorderWidth : 0, SCATTERMouseOverTooltipsPadding : "3px", SCATTERMouseOverTooltipsBorderRadius : "3px", SCATTERMouseOverTooltipsOpacity : 0.8, genomeFillColor: ["#999999"], ticks : { display : true, len : 5, color : "#000", textSize : 8, textColor : "#000", scale : 20 }, genomeLabel : { display : false, textSize : 16, textColor : "red", dx : 3.14, dy : "-0.95em" } }); BioCircos01.draw_genome(BioCircos01.genomeLength); </script> </body> </html>
2. Open the html file in the browser to see the following results.
Download