Downloads

LncRNA download

Human LncRNA gz  

Human LncRNA:

  • Column1    Chromosome

  • Column2    Transcription Start (hg19)

  • Column3    Transcription End (hg19)

  • Column4    lncRNA gene

  • Column5    Score

  • Column6    Strand

  • Column7    thickStart

  • Column8    thickEnd

  • Column9    ItemRgb

  • Column10    BlockCount

  • Column11    BlockSize

  • Column12    BlockStart

  • Column13    isoformsNumber

  • Column14    conservation

  • Column15    SNPNumber

  • Column16    CNVNumber

  • Column17    fusionNumber

  • Column18    phastConsPrimate

  • Column19    phastConsVertebrate

    • Mouse LncRNA gz  

    Mouse LncRNA:

  • Column1    Chromosome

  • Column2    Transcription Start (mm9)

  • Column3    Transcription End (mm9)

  • Column4    lncRNA gene

  • Column5    Score

  • Column6    Strand

  • Column7    thickStart

  • Column8    thickEnd

  • Column9    ItemRgb

  • Column10    BlockCount

  • Column11    BlockSize

  • Column12    BlockStart

  • Column13    isoformsNumber

  • Column14    conservation

  • Column15    phastConsEuarchontoglires

  • Column16    phastConsPlacental

  • Column17    phastConsVertebrate

  • Column18    lncRNAClass

  • Column19    lncRNALength

  • Column20    SNPNumber

    • Zebrafish LncRNA gz  

    Zebrafish LncRNA:

  • Column1    Chromosome

  • Column2    Transcription Start (danRer7)

  • Column3    Transcription End (danRer7)

  • Column4    lncRNA gene

  • Column5    Score

  • Column6    Strand

  • Column7    thickStart

  • Column8    thickEnd

  • Column9    ItemRgb

  • Column10    BlockCount

  • Column11    BlockSize

  • Column12    BlockStart

  • Column13    isoformsNumber

  • Column14    conservation

  • Column15    phastConsFish

  • Column16    phastConsVertebrate

  • Column17    lncRNAClass

  • Column18    lncRNALength

  • Column19    SNPNumber

    • Fruitfly LncRNA gz  

    Fruitfly LncRNA:

  • Column1    Chromosome

  • Column2    Transcription Start (dm3)

  • Column3    Transcription End (dm3)

  • Column4    lncRNA gene

  • Column5    Score

  • Column6    Strand

  • Column7    thickStart

  • Column8    thickEnd

  • Column9    ItemRgb

  • Column10    BlockCount

  • Column11    BlockSize

  • Column12    BlockStart

  • Column13    isoformsNumber

  • Column14    phastConsInsects

  • Column15    lncRNAClass

  • Column16    lncRNALength

  • Column17    SNPNumber

    • Worm LncRNA gz  

    Worm LncRNA:

  • Column1    Chromosome

  • Column2    Transcription Start (ce10)

  • Column3    Transcription End (ce10)

  • Column4    lncRNA gene

  • Column5    Score

  • Column6    Strand

  • Column7    thickStart

  • Column8    thickEnd

  • Column9    ItemRgb

  • Column10    BlockCount

  • Column11    BlockSize

  • Column12    BlockStart

  • Column13    isoformsNumber

  • Column14    phastConsWorms

  • Column15    lncRNAClass

  • Column16    lncRNALength

  • Column17    SNPNumber

    • Arabidopsis LncRNA gz  

    Arabidopsis LncRNA:

  • Column1    Chromosome

  • Column2    Transcription Start (TAIR10)

  • Column3    Transcription End (TAIR10)

  • Column4    lncRNA gene

  • Column5    Score

  • Column6    Strand

  • Column7    thickStart

  • Column8    thickEnd

  • Column9    ItemRgb

  • Column10    BlockCount

  • Column11    BlockSize

  • Column12    BlockStart

  • Column13    isoformsNumber

  • Column14    lncRNAClass

  • Column15    lncRNALength

  • Column16    SNPNumber

    • Rat LncRNA gz  

    Rat LncRNA:

  • Column1    Chromosome

  • Column2    Transcription Start (rn5)

  • Column3    Transcription End (rn5)

  • Column4    lncRNA gene

  • Column5    Score

  • Column6    Strand

  • Column7    thickStart

  • Column8    thickEnd

  • Column9    ItemRgb

  • Column10    BlockCount

  • Column11    BlockSize

  • Column12    BlockStart

  • Column13    conservation

  • Column14    phastConsVertebrate

  • Column15    lncRNAClass

  • Column16    lncRNALength

    • Chicken LncRNA gz  

    Chicken LncRNA:

  • Column1    Chromosome

  • Column2    Transcription Start (galGal3)

  • Column3    Transcription End (galGal3)

  • Column4    lncRNA gene

  • Column5    Score

  • Column6    Strand

  • Column7    thickStart

  • Column8    thickEnd

  • Column9    ItemRgb

  • Column10    BlockCount

  • Column11    BlockSize

  • Column12    BlockStart

  • Column13    isoformsNumber

  • Column14    conservation

  • Column15    phastConsVertebrate

  • Column16    lncRNAClass

  • Column17    lncRNALength

    • Cow LncRNA gz  

    Cow LncRNA:

  • Column1    Chromosome

  • Column2    Transcription Start (bosTau6)

  • Column3    Transcription End (bosTau6)

  • Column4    lncRNA gene

  • Column5    Score

  • Column6    Strand

  • Column7    thickStart

  • Column8    thickEnd

  • Column9    ItemRgb

  • Column10    BlockCount

  • Column11    BlockSize

  • Column12    BlockStart

  • Column13    isoformsNumber

  • Column14    conservation

  • Column15    lncRNAClass

  • Column16    lncRNALength

    • SNP download

    Human SNP gz  

    Human SNP:

  • Column1    Chromosome

  • Column2    Start (hg19)

  • Column3    End (hg19)

  • Column4    SNP

  • Column5    Score

  • Column6    Strand

  • Column7    DNA_3D_Organization

  • Column8    ChIP-seq

  • Column9    Predicted_TFBS

  • Column10    eQTL

  • Column11    m6A_modification

  • Column12    Peptide

  • Column13    disease

  • Column14    Ref Allele

  • Column15    Alt Allele

  • Column16    RefFrequency

  • Column17    AltFrequency

    • Mouse SNP gz  

    Mouse SNP:

  • Column1    Chromosome

  • Column2    Start (mm9)

  • Column3    End (mm9)

  • Column4    SNP

  • Column5    Score

  • Column6    Strand

  • Column7    DNA_3D_Organization

  • Column8    ChIP-seq

  • Column9    Predicted_TFBS

  • Column10    m6A_modification

  • Column11    Peptide

  • Column12    Ref Allele

  • Column13    Alt Allele

    • Zebrafish SNP gz  

    Zebrafish SNP:

  • Column1    Chromosome

  • Column2    Start (danRer7)

  • Column3    End (danRer7)

  • Column4    SNP

  • Column5    Score

  • Column6    Strand

  • Column7    Peptide

  • Column8    Ref Allele

  • Column9    Alt Allele

    • Fruitfly SNP gz  

    Fruitfly SNP:

  • Column1    Chromosome

  • Column2    Start (dm3)

  • Column3    End (dm3)

  • Column4    SNP

  • Column5    Score

  • Column6    Strand

  • Column7    DNA_3D_Organization

  • Column8    ChIP-seq

  • Column9    Predicted_TFBS

  • Column10    Peptide

  • Column11    Ref Allele

  • Column12    Alt Allele

    • Worm SNP gz  

    Worm SNP:

  • Column1    Chromosome

  • Column2    Start (ce10)

  • Column3    End (ce10)

  • Column4    SNP

  • Column5    Score

  • Column6    Strand

  • Column7    ChIP-seq

  • Column8    Predicted_TFBS

  • Column9    Ref Allele

  • Column10    Alt Allele

    • Arabidopsis SNP gz  

    Arabidopsis SNP:

  • Column1    Chromosome

  • Column2    Start (TAIR10)

  • Column3    End (TAIR10)

  • Column4    SNP

  • Column5    Score

  • Column6    Strand

  • Column7    Predicted_TFBS

  • Column8    m6A_modification

  • Column9    Peptide

  • Column10    Ref Allele

  • Column11    Alt Allele

    • CNV and Fusion download

    Human CNV gz  

    Human CNV:

  • Column1    Chromosome

  • Column2    Start (hg19)

  • Column3    End (hg19)

  • Column4    CNV ID

  • Column5    Score

  • Column6    Strand

  • Column7    Type

  • Column8    disease_abbreviation

  • Column9    sampleNumber

  • Column10    disease

  • Column11    lncRNA

  • Column12    lncRNA gene

  • Column13    Log-Rank test pvalue

    • Human Fusion gz  

    Human Fusion:

  • Column1    FusionID

  • Column2    gene1

  • Column3    gene2

  • Column4    chromosome of gene1

  • Column5    cheomosome of gene2

  • Column6    type of gene1

  • Column7    type of gene2

  • Column8    cell line

  • Column9    deFuse

  • Column10    FusionMap

    • TFBS download

    Human TFBS txt  

    Human TFBS:

  • Column1    LncRNA genes

  • Column2    Transcription factor

  • Column3    Start of transcription factor binding site

  • Column4    End of transcription factor binding site

  • Column5    LOD score

    • Mouse TFBS txt  

    Mouse TFBS:

  • Column1    LncRNA genes

  • Column2    Transcription factor

  • Column3    Start of transcription factor binding site

  • Column4    End of transcription factor binding site

  • Column5    LOD score

    • Fruitfly TFBS txt  

    Fruitfly TFBS:

  • Column1    LncRNA genes

  • Column2    Transcription factor

  • Column3    Start of transcription factor binding site

  • Column4    End of transcription factor binding site

  • Column5    LOD score

    • Worm TFBS txt  

    Worm TFBS:

  • Column1    LncRNA genes

  • Column2    Transcription factor

  • Column3    Start of transcription factor binding site

  • Column4    End of transcription factor binding site

  • Column5    LOD score

    • Zebrafish TFBS txt  

    Zebrafish TFBS:

  • Column1    LncRNA genes

  • Column2    Transcription factor

  • Column3    Start of transcription factor binding site

  • Column4    End of transcription factor binding site

  • Column5    LOD score